Journal: BMC Genomics

Article Title: Inter-Platform comparability of microarrays in acute lymphoblastic leukemia

doi: 10.1186/1471-2164-5-71

Figure Lengend Snippet: Training and test datasets used to validate ALL subclass predictors

Article Snippet: The independent datasets that we accumulated, including the one generated in our lab, spanned four different microarray platforms: Affymetrix HuGene FL, U95Av2, U133A and custom cDNA microarray platforms (Table ).

Techniques: Microarray

Journal: BMC Genomics

Article Title: Inter-Platform comparability of microarrays in acute lymphoblastic leukemia

doi: 10.1186/1471-2164-5-71

Figure Lengend Snippet: Prediction accuracies for ALL subclasses as determined by the different microarray platforms.

Article Snippet: The independent datasets that we accumulated, including the one generated in our lab, spanned four different microarray platforms: Affymetrix HuGene FL, U95Av2, U133A and custom cDNA microarray platforms (Table ).

Techniques: Microarray

Journal: Biology Direct

Article Title: Too much data, but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression

doi: 10.1186/1745-6150-1-33

Figure Lengend Snippet: Distribution of correlation coefficient in tissue distribution between SAGE and microarray platforms. (A) Correlation between SAGE and GDS422; (B) Correlation between SAGE and GDS181; (3) Correlation between SAGE and GDS596. X-axis represents the number of genes in each correlation category; Y-axis represents the correlation coefficient. There were similar numbers of negative correlation as positive correlation, with slightly more positive correlated genes between the platforms.

Article Snippet: Microarray data were from GDS596 (Affymetrix U133A platform), GDS594 and GDS181(Affymetrix U95Av2 platform), and these data were generated with a wide array of tissues, organs of the normal physiological state.

Techniques: Microarray

Journal: Biology Direct

Article Title: Too much data, but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression

doi: 10.1186/1745-6150-1-33

Figure Lengend Snippet: The distribution of correlation coefficients across the number of common tissue types that data are available for both microarray and SAGE platforms. (A)SAGE and GDS422; (B) SAGE and GDS181; (C) SAGE and GDS596. X-axis represents the number of common tissue types, Y-axis represents the correlation coefficient.

Article Snippet: Microarray data were from GDS596 (Affymetrix U133A platform), GDS594 and GDS181(Affymetrix U95Av2 platform), and these data were generated with a wide array of tissues, organs of the normal physiological state.

Techniques: Microarray

Journal: Biology Direct

Article Title: Too much data, but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression

doi: 10.1186/1745-6150-1-33

Figure Lengend Snippet: The distribution of correlation coefficients across the expression level of genes in SAGE and microarray platforms. X-axis represents the correlation coefficient and Y-axis represents the expression level. (A, B, E) Low, high and average expression levels across the significant correlation from GDS596. (C, D, F) Low, high and average expression levels across the significant correlation from SAGE data. Expression values were log10 transformed.

Article Snippet: Microarray data were from GDS596 (Affymetrix U133A platform), GDS594 and GDS181(Affymetrix U95Av2 platform), and these data were generated with a wide array of tissues, organs of the normal physiological state.

Techniques: Expressing, Microarray, Transformation Assay

Journal: World Journal of Gastroenterology

Article Title: Transcriptome analysis creates a new era of precision medicine for managing recurrent hepatocellular carcinoma

doi: 10.3748/wjg.v29.i5.780

Figure Lengend Snippet: Comparisons of real-time quantitative reverse transcription PCR, microarrays, and RNA-sequencing and their applications in hepatocellular carcinoma recurrence

Article Snippet: The surfacing of commercial platforms, such as Human UniGene Set RZPD 1 clone set for cDNA microarrays and Affymetrix Human Genome U95Av2 array for oligonucleotide arrays, have made the technology for both types of arrays widely accessible[ ].

Techniques: Isolation, cDNA Library Assay, Amplification, Labeling, Fluorescence, Hybridization, Sequencing, High Throughput Screening Assay